The 10 Best Accounting Apps for Shopify
The top 10 apps merchants see when they search the Shopify App Store for accounting, in the exact order the store ranks them. Only Shopify's organic ranking is shown, never sponsored ads.
Updated July 12, 2026 · Organic results only-
1
QuickBooks Online
Sync your retail and B2B sales activity to QuickBooks
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2
A2X Sync for QuickBooks & Xero
Automated, accurate accounting in QuickBooks Online or Xero
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3
Xero
Sync daily sales to Xero for streamlined ecommerce accounting.
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4
QuickBooks Sync by MyWorks
Automatically sync sales, inventory & more with QuickBooks.
Built for Shopify -
5
Report Pundit: Custom Reports
Create custom reports, combine data, and automate delivery
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6
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7
Bookkeep Accounting+Inventory
Automated accounting for QuickBooks, NetSuite or Sage Intacct.
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8
Finaloop
Accounting, bookkeeping & inventory service for ecommerce
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9
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10
Webgility x QuickBooks Desktop
Automate accounting, inventory and payout reconciliation
Built for ShopifyFrequently asked questions
Which is the best Accounting app for Shopify?
Based on the Shopify App Store's own organic ranking for "accounting", QuickBooks Online currently holds the #1 spot, with a 4.8 star rating across 3,116 reviews. The best choice for your store still depends on your requirements, so compare the top results above.
How is this ranking determined?
We record the organic results merchants actually see when searching the Shopify App Store for "accounting", refreshed daily. Sponsored ("Ad") placements are excluded, so positions reflect Shopify's real search ranking rather than paid promotion. Source: the Shopify App Store search results for "accounting", you can verify the current ranking there yourself.
Which Accounting apps are Built for Shopify?
3 of the top 10 accounting apps hold the Built for Shopify badge: QuickBooks Sync by MyWorks, Custlo ‑ Customer accounts app, Hyve ‑ Post to Xero.
What does the Built for Shopify badge mean?
Built for Shopify
Built for Shopify is the highest level of recognition Shopify awards an app. To earn
the badge, an app must meet Shopify's standards for safety, performance, ease of use,
and proven usefulness: it cannot slow down the admin, storefront, or checkout, must
integrate seamlessly into the Shopify admin, and must demonstrate quality through
installs, reviews, and ratings over time. When comparing similar apps, preferring
ones with the badge is a safe default.
Learn more about the Built for Shopify badge →
As of July 12, 2026, the top-ranked accounting app on the Shopify App Store is QuickBooks Online, with a 4.8 star rating across 3,116 reviews. 3 of the top 10 carry the Built for Shopify badge, and the average rating is 4.8 stars across 6,157 reviews.
Related keyword rankings
Rank higher on the Shopify App Store
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